Scaffold Ga0213867_1016481

Overview

Basic Information

• Taxon OID: 3300021335
• Scaffold ID: Ga0213867_1016481
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO540
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3061
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022313	Metagenome	215	Y
F075429	Metagenome	119	N
F098218	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0213867_10164814	F075429	GAG	MPGTTELPETVTEFLEDGSVAVVVGHLRGWVSSAHLIEPKANQLMRKWLEEKSEALLNEDYDGAA
Ga0213867_10164817	F098218	GAG	MVMTSFSSWSKRPEEMRAAAKARAIAALHHKHSNGLTTLERAYLHALRTGRLDVDLED
Ga0213867_10164819	F022313	N/A	STKLERILKELQSVIEREKKRHMMDEHLTHSMRDLLEYEIIPLLEAEVYYDPTPQY