NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213867_1002904

Scaffold Ga0213867_1002904


Overview

Basic Information
Taxon OID3300021335 Open in IMG/M
Scaffold IDGa0213867_1002904 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO540
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7494
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (91.30%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Roseobacter phage CRP-1(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004209Metagenome / Metatranscriptome448Y
F021973Metagenome / Metatranscriptome216Y
F047989Metagenome / Metatranscriptome149Y
F074828Metagenome119N
F084180Metagenome / Metatranscriptome112N

Sequences

Protein IDFamilyRBSSequence
Ga0213867_100290414F084180GAGGMKVYNAMNNIYVHYLGREISIAQHISNGITSVQEIADVSDLDNPIRYDKTLPSLIAALQELQNEIDKQIWGDKPSGESTATAAQSSAGSTA
Ga0213867_100290417F047989AGGAGMPKYEEVFATLSGHFLTQALPFWWQDFNDEYLEEWFTECALDTYEYWDWEQVYKMIGDLTDTVMELYNASNT
Ga0213867_100290422F074828AGGAGMEAKIKLTKTMLDKSIIDANKSVREFLDSDFGMNYDDKFFTAEWYDTERERTMRNAFFVVGEYADGTEANVKFYRSAKRGDKRISIQKLKQYAAVGDEVILTSDAESLHDGYRIQINIVRQEANATG
Ga0213867_10029044F004209AGGMWIGILLVCFDPMALSCKIIAKPEPFYTEQACLEEAEKVAANIRAGGAYATPHCHKVEGNSA
Ga0213867_10029048F021973AGGAMAKSANKATNQVGTTLDALVKEGKALGKMWSTLNSVKQSTKANGFDTRLGKLLSTLKAQSAHDSGQIPTHVLRTHGIANIDRRRRAEALWFYENQAECVEFIKASKKGFTSLTALQAAMRKAAKADEPTAKAEPSNVGQSDEPKQAKLVEQSETKVSVGPITRTKMVQTILKQCELNGLDLETIVDDLISAIAKQEKSA
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Institute for Fundamental Biomedical Research
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