Scaffold Ga0213867_1002619

Overview

Basic Information

• Taxon OID: 3300021335
• Scaffold ID: Ga0213867_1002619
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO540
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7903
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (37.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018644	Metagenome	234	Y
F055644	Metagenome / Metatranscriptome	138	Y
F061785	Metagenome	131	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0213867_100261912	F055644	N/A	MSHEFLDYDNDSDYGWGDSITSTNYNYFYVPSIPEWAYSEFDGLLYEGTQYNWKEVDYRLSVDYNSVPEPAFIGLFMGLCLLTLTLIKRK
Ga0213867_100261913	F018644	N/A	MEFFKYIFENYKDNMLGMAFAYIGIISIVMMFLPKDNFINKLFKEFASIFTSLFKK
Ga0213867_100261916	F061785	N/A	PSQHRRKSSMEETLQRLSVGIFGWIATDTIQNVDLMLGVVSKFVLITLTVLSIYKLWREL