Scaffold Ga0213867_1002135

Overview

Basic Information

• Taxon OID: 3300021335
• Scaffold ID: Ga0213867_1002135
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO540
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8809
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 27 (90.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001521	Metagenome / Metatranscriptome	679	Y
F010318	Metagenome / Metatranscriptome	305	Y
F015793	Metagenome / Metatranscriptome	252	Y
F078570	Metagenome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0213867_100213521	F010318	AGGAGG	MNVDNDKPRYLECIYEAPITFDLEELSIDWEDVKDYYIKYGTLYVDFKDGTSESYYNGDVGETDYKWAVRESILTEDWDLVEGLNXXQIMLY
Ga0213867_100213522	F078570	GGAGG	MTDYVILEGKVMWAFLNKKDKWGAYGMCLIPNKKSLEIVKENKFYNYKKDKGWISLRNRELNFNIYDKQNNLVMNLPYYLGNNSHIKVRCESFIWKMNNEKCLHLKDIKILKHVKIKSDINWETEXIKHYTENL
Ga0213867_10021355	F001521	GAGG	MKLWITEHVNEDGAAIGPYIKADTVAEANRIAIQYGLLVLGEIQELQHDTKVKERTLH
Ga0213867_10021359	F015793	GAGG	MLSIKTFEDRYNNNKKFHHVNLLGLKFRVANNKRSKKLSNKILYSTDRGIVFNLIPSRYLCLITRSXYEL