Scaffold Ga0213867_1002064

Overview

Basic Information

• Taxon OID: 3300021335
• Scaffold ID: Ga0213867_1002064
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO540
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8960
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (40.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029094	Metagenome	189	N
F030097	Metagenome	186	N
F044196	Metagenome	155	N
F080621	Metagenome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0213867_100206412	F080621	N/A	MENINETIATLSIDIACLLDEPSEVTKDDLLKIQDLVTKLENDTNTPXTN
Ga0213867_100206413	F044196	N/A	MEDITDKLENAKILINQMIGSHQGTPEAATQYAIYQLGLPQDVASSLIQYANQVNKQXEQ
Ga0213867_100206414	F030097	N/A	MRAIDTAGTQSKISSCMGFMASGAARDAYRRLLTASTVGESKGEQRKSPFSRTTKEKVKK
Ga0213867_10020647	F029094	N/A	MSTKGSQPRQLNRDDKKLEENWSKINWSGKPKGIKVKSSKGGVKTRMVYKDE