Scaffold Ga0213867_1001768

Overview

Basic Information

• Taxon OID: 3300021335
• Scaffold ID: Ga0213867_1001768
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO540
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9639
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (33.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012280	Metagenome / Metatranscriptome	282	Y
F020899	Metagenome	221	N
F021305	Metagenome / Metatranscriptome	219	Y
F030730	Metagenome / Metatranscriptome	184	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213867_100176810	F030730	N/A	MGKLKEKIIEKGSGLVAKSKSKKQLEKILPKPLAKQISKKVGKGVESITSTAIDLWNKFK
Ga0213867_100176811	F012280	N/A	MPVKIKPSTKDYLRDSKGKMTNKWVWKHYTTTNTSTEELIKLYESPSYKRKKQVIRRELEKRNVWENLKKK
Ga0213867_100176812	F020899	N/A	MRKYIALILFVILSCQPEELMIVEPLPQYEMIFEESQSSVTDGQEFSFEIISEEEHHLVISKDGSVITKESFLPTLELNTRKIYTKSLPNDLLKLELINSSGVIKNTFIQIY
Ga0213867_100176814	F021305	AGGAG	MKRKHIVIISLLIISAWAVGYFNQHYRAPKIEYIEIEKLQTVIDSIYVEKLVEKKVYVPKYITNTITDTIEVEVVKEVIVEKPVEVIKEVFIDRPVDVFVPKYELPESKWYAGFSYQYDLENYFSGANVQILHKFKSDKMFSLDVGFRNDLLDRETGVGKLRPYVGGTIYFRLDKPKSNF