Scaffold Ga0213867_1001480

Overview

Basic Information

• Taxon OID: 3300021335
• Scaffold ID: Ga0213867_1001480
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO540
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10476
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (82.14%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006020	Metagenome / Metatranscriptome	383	Y
F013173	Metagenome / Metatranscriptome	273	N
F020186	Metagenome / Metatranscriptome	225	N
F020791	Metagenome / Metatranscriptome	222	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213867_100148026	F006020	N/A	MRATDVVRQVLDLLDEIDGPHDIEDGVEAEVHVHQNNDSDSRFKHILAMLDPQSFDGVANRPNEVVAPISAVTTDAGGGVNGPKHPADIRVKDPRGYE
Ga0213867_100148027	F020186	GAGG	MAILSSINPNRPQRGKRSVRLSGEASPQEIPLSAGTVVLIANGSGTTFTLANGQEGQMMTFVASSDGAGNINDIRVNCRARYAFDNSGVRITGASSTAEWAPFTALQEHSMAWAVFTEGEWCWSQGTNEE
Ga0213867_100148028	F013173	AGGA	MAANGISTLANKQLRQVAKLDLAQAKRKGRVITEGSGTWSDNGVDDATANYARANSMYDLTALPTNYNVNAVNDIPNPDGLLVKRPWVTAQVIAEPETLSDAIIGGGGDLTDLQIWYDAADTATIIPNATDESQITQWTDKSNFAHNANPDGGSAKPTYEDTTPQNGYGYIEFDGVDDRLTINPFTQLAGATGWTMFVVAQKTDGAETTGVLTRTDYGDLRIELAATGSGVTVTTAGQTEVYASQSDTNWNAWTLV
Ga0213867_10014803	F020791	GAGG	MIKALLFIAIGAVGAYLYMNPGDIDGATEMLKQGVNQGATIVKEATDS