Scaffold Ga0213867

Basic Information
Taxon OID	3300021335 Open in IMG/M
Scaffold ID	Ga0213867_1000840 Open in IMG/M
Source Dataset Name	Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO540
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300021335 Open in IMG/M

Scaffold ID

Ga0213867_1000840 Open in IMG/M

Source Dataset Name

Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO540

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	13714
Total Scaffold Genes	36 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (27.78%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

13714

Total Scaffold Genes

36 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

10 (27.78%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (33.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location Name	USA: North Carolina
Coordinates	Lat. (^o)	34.7181	Long. (^o)	-76.6707	Alt. (m)	Depth (m)	1
Location on Map

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Source Dataset Sampling Location

Location Name

USA: North Carolina

Coordinates

Lat. (^o)

34.7181

Long. (^o)

-76.6707

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006322	Metagenome / Metatranscriptome	376	Y
F010877	Metagenome / Metatranscriptome	298	Y
F026712	Metagenome / Metatranscriptome	197	Y
F030556	Metagenome / Metatranscriptome	185	Y
F035552	Metagenome	172	N
F059466	Metagenome / Metatranscriptome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213867_100084010	F030556	N/A	MANDKVFVGKTNVVNTKYGQIVKVALGPQDFEVLQNNKNDKGWVNLEIKDKRDGGKYIQLQGEMKPKAVGVNDTDDGMPF
Ga0213867_100084017	F035552	GGAG	MNIKDDLLLRADLDTLYGALGMLAEKCKEDDELIKVLLHFEQFVEIHKTRTRDMVTYRDTIEKARNEYRSLKLKYDGTKDLLNQTRDMLHKVMNQKIDDNVDNQF
Ga0213867_100084023	F026712	N/A	MKANFYPTDSEQETLMDLVIRELYLRGQSMDNYNVQEVAYRQAISDGAMRTDNYFV
Ga0213867_100084031	F010877	N/A	MTRKSLIIALVGSGLPKGELKEEMFAFHNSMVGKSQYFKKQENPKTACGSCIQRVKTAVFKWYHYDDKAPNYKELEFTGKLGAHNIPLYKLI
Ga0213867_100084032	F006322	AGG	MGVKRNRKGDIVLGPGSELTELQSAFLERVKSEGIEEGGKIAKSLGYTNYYRDRRTEGTAFYREIMKFVESEAKSIEAAKGTNLSKLISIRDAALANGDMKVAMEAIKIINDMQGYKAPTKIEQTKLDITATIDLTAPKEEEQGYIDLD
Ga0213867_10008409	F059466	N/A	MWKDVKNELPTNTFECVVKMWNQFNDTWVTGIGIYDIPTKQWEVSSNIGEQYPVHFWFQTPELIEVK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0213867_1000840

Overview

Ecosystem & Geography

Associated Families

Sequences