Scaffold Ga0213867_1000818

Overview

Basic Information

• Taxon OID: 3300021335
• Scaffold ID: Ga0213867_1000818
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO540
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13906
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (68.18%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001582	Metagenome / Metatranscriptome	668	Y
F002221	Metagenome	581	Y
F004956	Metagenome / Metatranscriptome	417	Y
F006845	Metagenome / Metatranscriptome	363	Y
F013088	Metagenome / Metatranscriptome	274	Y
F038657	Metagenome / Metatranscriptome	165	N
F088799	Metagenome / Metatranscriptome	109	N
F093807	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0213867_100081816	F002221	GAG	MKTYLDETLETKLKELRDYESETYIRWGSRKRIFKMVDVKFEIKFCKAEMLLRDTMHNGHAKKKIQMVEMMHRAFDALNKKCEESGYTRIQPNTRCFNFDMKTAIVCDTDDEKPILNKIHKDEPDMMIFSVEELLRCIPSDFMKAKELLSKLDKTVNFERISYD
Ga0213867_100081818	F038657	GGAG	MSILGGMGNTENKQQIYLGFKTMGQKFYANGETEVDVKYLQLDPETFKSGWGRYTKADGFEYKWDSKFTVPEKRPSEEWKRAFSCWVMPHGAEHPYLWQRFSFAETSAFDKLLDLFWHDVANNHGKLPVVEFTGSKIIQVGMGSSSELSFKFSKWADRFNGNVVPDWYIDPDAAADDDDGFVSPNEGLADKVNDMIVKTSELSDDDIPF
Ga0213867_100081819	F006845	AGG	MDLNSYLFEEDFEEFCRSSYNKIQVACEFLGIINDEDYEGFKERCYTQLETDYINSIENLTIH
Ga0213867_100081821	F093807	N/A	MKQRKAMTQYKDIVELQRLKLNKERDEWYIHVNNGAGYTEVKQGNTLTITYHDTGKKEIIVNAN
Ga0213867_100081822	F013088	GGAG	MDEVIKKALWIPEELHKDIKIFAIENNLTIEQASQMLIKLGMVTYEAEKGYDSV
Ga0213867_10008183	F004956	AGGAG	MKMISPNGKVSIIAHPSKVESLLNMGWKEEAVHSQDKIKSSSKKKSKDEVENGNT
Ga0213867_10008185	F088799	GAGG	MSQYMLETEEDMLAYFDVDFGHAINATYIRGGVSTAIKIILNREYVEQDTGIGVEATKPIAYCRSIDVPSVTQGDLLNASATTTVEGDILKAAQNYTIIDVQKDRTGLTALMLEEV
Ga0213867_10008186	F001582	N/A	MPIESSADFNSYVDPNAHGVSATFIETQTTLWDSRTSLIDTWHDIDTGDSYPINIIIDQEYFSIATGSVPVDGYQPRAIIKSTDAPYINHGDQIKVDAITTNNGNTLVPQTLFTIKTVMPDNTGLIEVVLEEQ