Scaffold Ga0213867_1000737

Overview

Basic Information

• Taxon OID: 3300021335
• Scaffold ID: Ga0213867_1000737
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO540
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14566
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (60.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002399	Metagenome / Metatranscriptome	563	Y
F005816	Metagenome / Metatranscriptome	389	N
F010392	Metagenome / Metatranscriptome	304	Y
F015990	Metagenome	250	N
F083372	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0213867_100073713	F005816	AGGAG	MDLTNFNVDASSEGKSAVEPGRHVLHWQGEEEALVEGRNGWRGCKMYFEIDGSSIRLNHTFTVGHDNPKYVDSGVKSMLLMAQAMGLKEPPKDTSTAFMGKSVSAELVKDDNGYLKINEDWGKTWQATDKKPEPVDDNIKAGPSEADLDAMGTTVASEDDAPF
Ga0213867_100073716	F010392	N/A	MRVILINKTNRETEMVKENTTENVDEPTIKFADDGVEHKVNDMPDEAKQLMARWQEKKQIRDEFIIKANNDIDDLNTLLGSYEARMKNILEPAEDEPKIEVQ
Ga0213867_10007373	F002399	GGAG	MTIKTKTHKSIIGQLRKKYGLKDNTPIDKVEIAMTPKDWKAFSMALTFPNGKPSQRGK
Ga0213867_10007376	F083372	GGA	MQQYKISFPRAEFAYARHLRDNLKHEGEIIYPHEPSSRLLEDGTWLLITITGERLGTVSPSGTVRLT
Ga0213867_10007377	F015990	AGGA	MGKGSGRRIEDINKIRNNWDSIFKKRDKKQITKVIIEFEMPGYPSIDDINNHVEKLLKEDKLTTLTTTKNA