Scaffold Ga0213867_1000672

Overview

Basic Information

• Taxon OID: 3300021335
• Scaffold ID: Ga0213867_1000672
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO540
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15196
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (40.62%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040920	Metagenome	161	Y
F052585	Metagenome	142	N
F071139	Metagenome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213867_100067211	F071139	N/A	MGTAYHRAYSFEMKPTIEQVEKDGKLIWRVEAAGVVRYHEQDWQAEWLYNYLTRLYNCDETDPQ
Ga0213867_100067213	F052585	N/A	MSDDEKTAQAKRDDDRRHLHFQVRLDPVLAKNVQHYADQNHGGVRNAAVKTILSQFFKGINPDG
Ga0213867_100067219	F040920	N/A	MKSRPRYYNPGNKPEKTNFLVCAVFGVLFCAATWVTLTSVHNQQQVTHCEQGWQRACKGL