Scaffold Ga0213867_1000298

Overview

Basic Information

• Taxon OID: 3300021335
• Scaffold ID: Ga0213867_1000298
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO540
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 22613
• Total Scaffold Genes: 38
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 33 (86.84%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018178	Metagenome / Metatranscriptome	236	Y
F039123	Metagenome	164	N
F070064	Metagenome / Metatranscriptome	123	Y
F082548	Metagenome	113	Y
F088835	Metagenome / Metatranscriptome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0213867_100029814	F088835	AGG	MKEISPTDYIVSNQLNFLSGRVVHLVTEYNRTKDIQLLEEACRDLATLVQRERFIEERFSAECSS
Ga0213867_100029816	F082548	GAG	MRSPRAVASDMVKAMDAAAKQVWELEQKKESDEKLKALVFAHVCNSYARRGRYGSKETTG
Ga0213867_100029818	F018178	GGAG	MDRMDQILDRLSQRINEWEGASREAIEAETNFKSFEASSQKAHMDAGASAAKAQTETRSSGEWANHYRTVQQASLKAETLKKKIMLGQLAFDAERTKQANLRRVV
Ga0213867_100029821	F070064	GGAGG	MGRVKSEMFEEYLGPDDELVAKPISQVVDNIRYCDLPSNSVERFEYLSNQLKELMNGIRTNTD
Ga0213867_100029825	F039123	AGGGGG	MDKNEFTALYDQWFALHPFKKRDWVELGKVHYQAFGKESVALMTEALGQLTEELDRFPLPKDIRSKLNKLSSSKTEGGQTKSNVTSESEQIATRLLEHRHGVHYNGKVVKRPENVPAWIEQLVERVDNELGVQYPLTAKLGTLGFMVVQTEGRR