Scaffold Ga0213867_1000240

Overview

Basic Information

• Taxon OID: 3300021335
• Scaffold ID: Ga0213867_1000240
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO540
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25264
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (9.09%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 9

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004461	Metagenome / Metatranscriptome	437	Y
F005132	Metagenome / Metatranscriptome	411	Y
F008384	Metagenome	334	Y
F010570	Metagenome / Metatranscriptome	302	Y
F016811	Metagenome / Metatranscriptome	244	Y
F024348	Metagenome / Metatranscriptome	206	Y
F027314	Metagenome / Metatranscriptome	195	Y
F056899	Metagenome / Metatranscriptome	137	N
F092935	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213867_100024010	F008384	N/A	LKKNTRYDKVAIEREAILSAKQGRITEPLGEFILQRSIEIAGSAFVTDGNEELKQSLIDSAVMRTCEKFLYYYQGGKSAANLIISIIYSTMTNKIVSLNHSDIYGHNIKGYVVCIEDGEKFTRLQRYVKDSYLSQQL
Ga0213867_100024018	F005132	N/A	MVDVIFIDDNYLYQNFPLPKRMDRGALLALIQLEQYTSIQDLLGTCLYEDIEAKVVAQTLSATEEGLFKLVKYSLAMYSSKAAISILRTETARTKNEEGKQDQYILDTISSTIESKLGYINKRITNYILDNQEIKDIAVADGCDNDLFDEEDTYQGSVFYPKDGITDTSCEDGGVTYNL
Ga0213867_10002402	F016811	N/A	MSEEEKAEQLKQGQTIFDIGVRLAWKKKRGNGYVNMYLGTKDRPFQFVTRAKDINAINRNPEMIAKMMAFNGLTGKSVYDFHISEEFYRKEISKSFAHKEEDYEKEFGK
Ga0213867_100024021	F010570	N/A	MKTFRKYSFGSKGAATTKINALGVDEEGNPNHNHAIVHLGNLVEQEGTYDEEGNELTAPVLSSTYHIDVLWDGEADSSWDGQLVWCAPMGVHTFGSSSAIREWTEACRALHPEYFPEPSEELL
Ga0213867_100024026	F027314	N/A	MACTVTLADISYSCDDVAIGGIIELHIANKVDAEAALTLDSANRAITAATAVTGVSQISFNNKDGFSVFSEVKTVAADGIVATIPTISVELPKMTADKITALNNISKGGAELVAFVETAAGTYHVVGLDYGLYAGTVDANSGTGRAEKNRFQLTLTGDEQGLAYSIDAADFATATA
Ga0213867_100024027	F004461	N/A	MSISISNLPYGDRRPDLFIDAMVKSAAVLNRFRLIDGVKAKVNVPIFDASLTFGNDLCVFDSQSTASVGEKEMTVETYKWAFLNCKDALESSYRGLLLKQGQHNPETMDAEFKDWVFDYFAKLSAQKALELAGTELTTEFGSDAAVLDYDTNATISSSNVLSLMEGAYETMSDVMLAAVYGDADRDFKPAYFLGTAAMQAYQIAIAGLYTTTPQGVVEGGIPNYYGMEVVHMASLPANEFFISAPQNLVMLTDDYNDVRAIDMKYEAELSSDKIWGQFKLGFSYLKGEEIVYAKNFA
Ga0213867_10002404	F092935	N/A	MNSTAEEKNNTHIHSLILDRKVAFANLVRAYLRFNVSDALNIVVEKDGNISINGKYYKFDVSDYTGCTENYIFFNPSSGRIVIEGNGVSKVYKVDVDLLDY
Ga0213867_10002406	F056899	N/A	MAKRNTFVTASISGDYGQDIVMKYLKDKGYEVEEAPKELFYDWDVKANKAGRTVTIEVKYDSKAYMWAARRGTPEQPNLYIEFENTNTGGPSGILKSKADFYFYILKTGDKDIAFVFDRVQFLQHLQLSNYKVVGNGATGDDNAKGWIPPLHELLVARYGYKATIDLTQYGK
Ga0213867_10002409	F024348	N/A	MSLDQYYEELTNDEADFILDIYNVIDRMVLERVPVTLVGLGYELGVNPQELSDHLPTIIQILNKVEEEYEIR