Scaffold Ga0213867_1000236

Overview

Basic Information

• Taxon OID: 3300021335
• Scaffold ID: Ga0213867_1000236
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO540
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25495
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 37 (86.05%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010471	Metagenome	303	Y
F012529	Metagenome / Metatranscriptome	280	Y
F013377	Metagenome	272	N
F036003	Metagenome	171	N
F062259	Metagenome	131	N
F081883	Metagenome	114	N
F087886	Metagenome	110	N
F092863	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0213867_100023613	F092863	GGAGG	VLFEITMLLDLDSDANFIAADKDGAKIGLEQAVSYAVYDIDDVEIIEIDVKEK
Ga0213867_100023627	F012529	GGAG	MIQDKTYKIKVGDYHDAVIYVYERHVKCLNPEEDDVGKRKYKHWKEVAAVIPVNNDFDDYQDTSGRFYTNVRVVVDALTELYGSSPDYEMGISYTMNTHQYINV
Ga0213867_100023629	F036003	N/A	MFNYKDKSVMFINCSLKHCYNTADYMIKRDKNNGYWKPRLYDDYDQDHSSVESIYDWTEIKDSVTDLPPVTTEEIERAYNEV
Ga0213867_100023630	F062259	AGGAG	MKTEKELDNEVREAFDRAVDSIMFDYMYMGTEKGRDDLEYMMFKHIETREYIKIPKCGVAFIKRKEIV
Ga0213867_100023633	F081883	GAGG	MTPRIEKIYNLIYYSDFDEYEIKQLAIGLLGTTLNDASWHQTADTVSSYKLDDERELDFDGGDNLR
Ga0213867_100023635	F010471	AGGA	MQLTLAINTNAYPEYDKRQLNEMLGLLPLWVAEHVGNDDNTDIVQFMTDRYGFGKLYKFDGKINKKGDYVSNYDDDADMPYIGKMITKDGYAYFYDHAIVALPQPDGKYFITRMD
Ga0213867_100023636	F087886	GGA	MDWDNSENKFVDRYSTYHTSKKKAVERAKSYIELIKVDKLGSVDERTKNSTSVHSASGDTLGYICSERLL
Ga0213867_100023638	F013377	GAGG	MNKKILKHWALFYKHNERQFISAPSKEELDKAIFGGAYAPSPNNVTYYVEYERDIKDTRYNQVHEV