Scaffold Ga0213867_1000038

Overview

Basic Information

• Taxon OID: 3300021335
• Scaffold ID: Ga0213867_1000038
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO540
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 61106
• Total Scaffold Genes: 57
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 51 (89.47%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019631	Metagenome	228	Y
F048235	Metagenome	148	Y
F078646	Metagenome / Metatranscriptome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0213867_10000382	F078646	AGCAG	MKTFKEFSLNIAPKGHKIVKVLDTKGGEVMVTKKDDKFHIMFDNQTVDTEDNEREAMKSARNFGQMMSKSNLGGASSSKIGGKRTGTGGYFK
Ga0213867_100003851	F048235	AGGA	MASLKNKLRKKHFDTQFRMKKKMDKLAAHDLEYAQSYDINEILSGNEAYQEFVSNKNYEY
Ga0213867_100003854	F019631	AGGAG	MLRFLALLFLLVPSIAKSQEMNKADMITEFADMATLIAAEVLQCGETDKDRVLSFNAIFDSFMLYTAEQEGVDLTQQDIEAYKLGILMQQYEGMMIAHANQGCDGINKIIHMYDDSLHYAESVYDYYQPLNSL