Scaffold Ga0213867_1000024

Overview

Basic Information

• Taxon OID: 3300021335
• Scaffold ID: Ga0213867_1000024
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO540
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 65799
• Total Scaffold Genes: 69
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (27.54%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004489	Metagenome / Metatranscriptome	436	Y
F021774	Metagenome / Metatranscriptome	217	Y
F046012	Metagenome / Metatranscriptome	152	Y
F050481	Metagenome / Metatranscriptome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213867_100002412	F021774	N/A	MAKNETTKVKSLEERGVKALESIAGSIGDINDWLYELDADMWQERLEWYLNEFYQIAKTKTVGTTNRPERGSERIQENKETQGEEDNS
Ga0213867_100002419	F046012	N/A	MGKYTTIQVKRELYKELHDYCCENGYSKSGLVERLIKIKLGISDKDKPNNVLRVSK
Ga0213867_100002455	F050481	N/A	MDNKEIIKKILELKLIKPQTQKIKAQIQKLQQKLSK
Ga0213867_100002457	F004489	N/A	MANPVICIEAINNVKKSVQGNDPRTWMKACAIETLLKGKSGKHFKNCLIGKMESTAQHIENPAGYADELYNEIKNKCN