Scaffold Ga0206696_1586317

Overview

Basic Information

• Taxon OID: 3300021334
• Scaffold ID: Ga0206696_1586317
• Source Dataset Name: Metatranscriptome of ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 500m 12015 (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1342
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter → unclassified Maribacter → Maribacter sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.6907
  • Long. (^o): -122.3448
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024812	Metagenome / Metatranscriptome	204	Y
F101907	Metagenome / Metatranscriptome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0206696_15863171	F024812	AGGGGG	MPATKQNFVHGTNMELEGVATSSFTVDFINTMVAETGDLSTGSAVAGLEATRAAIGVYLNVLSEGPLVDGNTQKTYTVRTDSLGTLISGNTLRDAIRALNGGGSVTATISSATVTATDIGILTAAAVT
Ga0206696_15863173	F101907	AGGAGG	MAYTGTIPAGGHGNYVSPNLAHEGEGVQVDFITVDLLATATGEVTHPYASANTAGLHMIREAFENNGVNILGNGVITAAHEHTFMVRRDSLDTISSTTTVAAIQAAIRALNSNAKITLTISSATAADRDMGKLTAMA