Scaffold Ga0210301_1017392

Overview

Basic Information

• Taxon OID: 3300021325
• Scaffold ID: Ga0210301_1017392
• Source Dataset Name: Metatranscriptome of estuarine water microbial communities from the Columbia River estuary, Oregon, United States ? R1033 (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 788
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 46.216
  • Long. (^o): -123.951
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F054031	Metagenome / Metatranscriptome	140	Y
F071229	Metagenome / Metatranscriptome	122	Y
F093858	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210301_10173922	F093858	N/A	MIDLNDPQTVCRSLSYLLDFLVMTVPVLSLAIFAWRIAR
Ga0210301_10173923	F054031	GGAGG	MSLKDWDAILANRDRAEALPETDWTTETPETEAAVRASGSTFGIPLRECSRRLERQRNALHDLLARRSSK
Ga0210301_10173924	F071229	AGGAGG	MSDTTAIISACLILMSLYTTFHLGIECERERARQARRRRFEEDQEK