Scaffold Ga0210295_1009689

Overview

Basic Information

• Taxon OID: 3300021323
• Scaffold ID: Ga0210295_1009689
• Source Dataset Name: Metatranscriptome of estuarine water microbial communities from the Columbia River estuary, Oregon, United States ? R9.63AS (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1495
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 46.249
  • Long. (^o): -123.986
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033811	Metagenome / Metatranscriptome	176	N
F061389	Metagenome / Metatranscriptome	132	Y
F066285	Metagenome / Metatranscriptome	127	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0210295_10096893	F033811	N/A	MDTNITQAFFEAIDYPHIKHIIRTNKSIKSYWGGKTPSIADLKRVITNMWKRVSEHDAAEDCVNGIVMIKNGKNVRIDFLYISYSLKMSEQSSSDNQEDVQQVIEPEKESSLTPP
Ga0210295_10096894	F061389	N/A	MNPGTIFNLKAHEEHEDLNIFMCEDLDGEGNEFWLSEGFVLGEFEDGYKPLCWTQDLFII
Ga0210295_10096895	F066285	N/A	MNKKDWKVVYFNRPEIHKNCVWSDGNRYFDGFLGSDNSVYRNTSGIPVKEPDAIYWVERPKTLSDDDE