Scaffold Ga0214542_1036718

Overview

Basic Information

• Taxon OID: 3300021321
• Scaffold ID: Ga0214542_1036718
• Source Dataset Name: Root nodule microbial communities from cowpea collected in UCLA plant growth center, Los Angeles, California, USA - CNSS1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1433
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 1

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Root Nodules → Root Nodule Microbial Communities Of Legume Samples Collected From Usa, Mexico And Botswana

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 34.06
  • Long. (^o): -118.44

Associated Families

Family	Category	Number of Sequences	3D Structure?
F091447	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214542_10367181	F091447	GGAGG	MMNSSGLECEVCVVTLTGLKVKEGGFXVKFVKVCEXFNGSDRLEIIFKSRKNKITQLSFILNMIRNYHYIIXFVVEKILICTNKNNIFH
Ga0214542_10367183	F091447	N/A	VCVVTLCGLKVKEGGFRVKFVKVCEXFDGSDRLEIIFKSRKNRNTKLSFILNMIRKYHYIIXFIVEKILICTNEYNVFH