Scaffold Ga0214544_1023724

Overview

Basic Information

• Taxon OID: 3300021320
• Scaffold ID: Ga0214544_1023724
• Source Dataset Name: Root nodule microbial communities from cowpea collected in UCLA plant growth center, Los Angeles, California, USA - CNSS3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3351
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium tuberculosis complex → Mycobacterium tuberculosis (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Root Nodules → Root Nodule Microbial Communities Of Legume Samples Collected From Usa, Mexico And Botswana

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 34.06
  • Long. (^o): -118.44

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000010	Metagenome	7424	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214544_10237241	F000010	AGGA	VKELLCDIAPMNSCHLLLTWVWLHFKMLNLDERSLYMRHEGHEMKLKFVTPRQASNDQHRLKEKIEKEEI
Ga0214544_10237242	F000010	AGGA	VKKVLCDIAPTNSCHILLRWVWLHFKTLNLDEHSLYFRQLGHEMKFKFVTPRQGSNDQHRLKEKIEKEEK
Ga0214544_10237245	F000010	AGGA	VKEVLCDIAPTNSCHLLLRWAWLQFKTLNLDEHSLYFSQLEHEMELKFVTPRQASKDQHRLKEKIEKEEI
Ga0214544_10237246	F000010	N/A	MNSCHLLLRWAWLHFQTLTLDERSVYLRREGHEMKLKFMTPRQATKDQHRLKEKIEKEEI
Ga0214544_10237247	F000010	AGGA	VKEVLCDIAPTKSCHLLLRWAWLQFKTLNLDEHSLYFRQLGHEMKLKFVTPRQGGNDQHRLKEKIEKEEI