Scaffold Ga0214544_1014869

Overview

Basic Information

• Taxon OID: 3300021320
• Scaffold ID: Ga0214544_1014869
• Source Dataset Name: Root nodule microbial communities from cowpea collected in UCLA plant growth center, Los Angeles, California, USA - CNSS3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8447
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (43.75%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium tuberculosis complex → Mycobacterium tuberculosis (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Root Nodules → Root Nodule Microbial Communities Of Legume Samples Collected From Usa, Mexico And Botswana

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 34.06
  • Long. (^o): -118.44

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000010	Metagenome	7424	Y
F039014	Metagenome	164	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214544_101486912	F039014	N/A	METYKKMERKLIDITLPRMEDKPQSLNTHSDKGPLTKLRDS
Ga0214544_101486916	F039014	N/A	METYKKMERKLIDITLSRMEDKPNSLNTHSDKEPLTKLRDS
Ga0214544_10148693	F039014	GGA	MERKLIDFTLPRMEDKPKSLNTHSDKGPLTKLRDS
Ga0214544_10148694	F000010	GAG	VKEVFCDVAPMDSCHLLLEWAWLCFKILNLDELSLCLGHEGDKVKLRFMTPRQVSKDQHRLKEKIEKNKE