Scaffold Ga0214544_1007866

Overview

Basic Information

• Taxon OID: 3300021320
• Scaffold ID: Ga0214544_1007866
• Source Dataset Name: Root nodule microbial communities from cowpea collected in UCLA plant growth center, Los Angeles, California, USA - CNSS3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18332
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Root Nodules → Root Nodule Microbial Communities Of Legume Samples Collected From Usa, Mexico And Botswana

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 34.06
  • Long. (^o): -118.44

Associated Families

Family	Category	Number of Sequences	3D Structure?
F046864	Metagenome	150	Y
F074464	Metagenome	119	Y
F079668	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214544_100786612	F046864	AGG	VRLYSLSSSVGWKAGDFTALEVSLAFPFRLGSASILRLRREFSWLNASISSALRFFKSASSCCIFAWPSRMAARSGVMLGGPEGPASACLFTPALLWVETIFREKWVLKVFVSCPTVGANCSCREQIR
Ga0214544_10078665	F079668	GGA	MDSLWDATWGSTLGRSAADQAKRSVLLIRIGVMVARSSKFKPVPRLIEWPLGSSRGEVSSTGSRRTSRPILGSRSSPDRAMLELGGRSIWLVC
Ga0214544_10078668	F074464	GGCGG	MMGVMWWAFVVRSRGVTGSRGGGMVVSTDEAAKVASTDQFFYFILECFAFFCGVAMVAVVTAIFGHVGVGGCGCLAWWRD