Scaffold Ga0214544_1000551

Overview

Basic Information

• Taxon OID: 3300021320
• Scaffold ID: Ga0214544_1000551
• Source Dataset Name: Root nodule microbial communities from cowpea collected in UCLA plant growth center, Los Angeles, California, USA - CNSS3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 69781
• Total Scaffold Genes: 64
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (40.62%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Root Nodules → Root Nodule Microbial Communities Of Legume Samples Collected From Usa, Mexico And Botswana

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 34.06
  • Long. (^o): -118.44

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033327	Metagenome	177	Y
F095008	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214544_100055148	F095008	N/A	MVFSTLQLTFDIPNVATLKHKCLSSMAKKFCGFKTKLTSRYVFGSKKNENPLLKYTWIDEDT
Ga0214544_100055157	F033327	N/A	MKMQERKVREERTPRDFYIGSLKPELHPVCQGNLILTLHYFKSFTKYSPLHFQNMQKHHKRFLNHTRITPAQQEPSYRPGKPPGTYTKLEKDQTSVVGHPILPQTTFSKLQTKPKAPRIYPRSIFNSCNTYDHEGESFHKFPEQIRALK
Ga0214544_100055159	F033327	N/A	MNMQERKVIEESRPRDFYTGSLKLELHLVCQDNLSLTLHYFKIFTKYSPLHFQNMQKHHNRLLNHTRDTPTQQEPSCRPRKPPGTHTKLEKDQTSVVAHRSLPQTTFFKLQTKPKATRIDPRSIFNCYKLYNHERESFHEFSKQFHI