Scaffold Ga0210306_1140745

Overview

Basic Information

• Taxon OID: 3300021312
• Scaffold ID: Ga0210306_1140745
• Source Dataset Name: Metatranscriptome of estuarine water microbial communities from the Columbia River estuary, Oregon, United States ? R1072 (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1637
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 46.232
  • Long. (^o): -123.886
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001259	Metagenome / Metatranscriptome	735	Y
F006135	Metagenome / Metatranscriptome	380	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0210306_11407456	F001259	AGGAG	MKDSFAFVYVHAWNGMVRVESLDTAKHIDGNPEWKHVATINPHVVLEQILRATIKDRNLIIKHLLT
Ga0210306_11407457	F006135	N/A	MSTHIKIENQTEVPVLVALFEQPKCNDHPTRSAVLKPGESCDWGSGSVPLGNYQCYAVMSGDASSHDEWVWHFPGIAEVVAPLELGFKLWHEGDIDWANVKAMSSDDLNATFGSAYTSAKSSTKSWNGMSSCIFHIRGGPSWVEETEQVGIFRPKTI