NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0223826_10192240

Scaffold Ga0223826_10192240


Overview

Basic Information
Taxon OID3300021256 Open in IMG/M
Scaffold IDGa0223826_10192240 Open in IMG/M
Source Dataset NameSheep rumen microbial communities from New Zealand - Tag 1283 SPADES assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)1789
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Foregut → Rumen → Cattle And Sheep Rumen → Cattle And Sheep Rumen Microbial Communities From New Zealand, For Comparative Studies

Source Dataset Sampling Location
Location NameNew Zealand
CoordinatesLat. (o)-42.26Long. (o)171.6Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F041054Metagenome / Metatranscriptome160Y
F052997Metagenome / Metatranscriptome141Y

Sequences

Protein IDFamilyRBSSequence
Ga0223826_101922402F052997AGGTGGMERATDVGYYDVFNSRLNRYGYDYQSRIQGKREENFRRQLLKSVYYVNFDYDGEVQEGELVPNTQNNTKTIQYLLTHVNLEIPNGTILFIPDKDNIEQPWMVYYLESMKASGYNRYIVLKMTHYITVINPNVPDERWSSWAYFYGQEDNMLKNELKSRSRSRVLYLENLKLSFFILPQMKEIKREYYLEVTTGEVTEPFRVTGYDVHSTPGVEFVSVDPVYKYDLSAAPERQEGEDEDDFYWLTGGKE
Ga0223826_101922403F041054GGAGGMGVRNCAELGENLQLIIKRLLKNQDLLKLLYYTDKDPLSHEDLTEEQIQNEVFNKLVKIVPYVGSKETAKSLVVLRVIRGTMNMQNEQFRDIRIGIEVFVPMTQWIIKDTNLRPFKILGEIQKSLNGKTINGLGKLHGGDFDLNFLSEEISDYETIYTLTEYN

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