NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0223826_10051510

Scaffold Ga0223826_10051510


Overview

Basic Information
Taxon OID3300021256 Open in IMG/M
Scaffold IDGa0223826_10051510 Open in IMG/M
Source Dataset NameSheep rumen microbial communities from New Zealand - Tag 1283 SPADES assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)3840
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (27.27%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Foregut → Rumen → Cattle And Sheep Rumen → Cattle And Sheep Rumen Microbial Communities From New Zealand, For Comparative Studies

Source Dataset Sampling Location
Location NameNew Zealand
CoordinatesLat. (o)-42.26Long. (o)171.6Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013263Metagenome272Y
F032501Metagenome / Metatranscriptome179Y

Sequences

Protein IDFamilyRBSSequence
Ga0223826_1005151010F013263N/AMKANNLKELRELRNQEKTIKARIDEISTEATNEAVAILAEKGLEKGEFEVEGIGKFQLQRTEVFDFADYHKYQQEQAVKWRENAKEKVKEQNLVKARTAVMNGYVKTFVELYPDKEPDEIKLTVKVVE
Ga0223826_100515102F032501N/AMKTEDEEKDWTKVLFEVIIKILTLGFYHVEKHRKK

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