NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0223826_10000264

Scaffold Ga0223826_10000264


Overview

Basic Information
Taxon OID3300021256 Open in IMG/M
Scaffold IDGa0223826_10000264 Open in IMG/M
Source Dataset NameSheep rumen microbial communities from New Zealand - Tag 1283 SPADES assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)106463
Total Scaffold Genes101 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (19.80%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Fibrobacteres → Fibrobacteria → Fibrobacterales → Fibrobacteraceae → Fibrobacter(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Foregut → Rumen → Cattle And Sheep Rumen → Cattle And Sheep Rumen Microbial Communities From New Zealand, For Comparative Studies

Source Dataset Sampling Location
Location NameNew Zealand
CoordinatesLat. (o)-42.26Long. (o)171.6Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F051210Metagenome / Metatranscriptome144Y
F071326Metagenome / Metatranscriptome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0223826_1000026466F071326N/AMSQEDMASRNLDKANKLYAIGAKNINFLMKMRGTSFVVLRPKDNSKWKNVFGGSYSSNSTMENDYTQFTTRLILDLNDMRDVWNRNRDMIQTITNDDSLQVGDELQYTRDKITYRFKIVQKQAFSEAAKAVYQYTLSSIVETLDE
Ga0223826_1000026486F051210N/AMYNTYSEYFNDPQLVSALMGTSRSLDDATHRANEYSKLFSRTDDYVSEKNLLEKTFSGYAETPLLSTQYFDATVASYVSSFAGFMSVERDFEHPNGLFYWYDVLGVTDMRTVIPNLGPDNYADIQTTGGFTTEVTPSANPSVKDYQVITGRKIIPGSVRVKLVENTDSYELVDNGRGSLMSIANKLASSSINYLNGTIAFTLVTNPTEVITVLGKEDVTGTPCNTNGASNAHANDKRFLAKMQQLYLATVPDTLMAETNIASIAASKKDLNVDIATFMFTKLRELYTKLINRTLVRTLEDSYTGLTMGTDTDGFSMTETALNGKFSEWRSRSDMFDSYLVDVESALAEKAVKGVNITAYVAGSRACNQFQKASQIGKFEKNTKMTYINDLLGWYDGIPVLRSTDIVEPVVNNKKRAVFYAIHKTADGAMAPLARGIYMPITDTPTVGNYNNPTQMVSGIWYQEGVRSMANELVQRVEFEI
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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