Scaffold Ga0223825_12681677

Overview

Basic Information

• Taxon OID: 3300021255
• Scaffold ID: Ga0223825_12681677
• Source Dataset Name: Sheep rumen microbial communities from New Zealand - Tag 1494 SPADES assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 23617
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (20.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Mammals → Digestive System → Foregut → Rumen → Cattle And Sheep Rumen → Cattle And Sheep Rumen Microbial Communities From New Zealand, For Comparative Studies

Source Dataset Sampling Location

• Location Name: New Zealand
• Coordinates
  • Lat. (^o): -42.26
  • Long. (^o): 171.6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013263	Metagenome	272	Y
F088017	Metagenome	109	Y
F096242	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0223825_126816772	F096242	N/A	MLLKLIKTRELISGAHCEVWEVNPVSGDQLLAEVFVLNEHLPLELIYRLTVTRVGICFAGRQCGWMWKNIPDQEVVEDYLLGIQRSREEIRIEVCRPKPVLPGYPEVDYHPDDFPVVLIDDLAEDELPEEPSYEQDDPVIVPLYR
Ga0223825_126816774	F088017	GAG	MKDSFEIIWAFLAPDEEQFGNRKDACKRLWSAMPKQKQRQIYATFVWQKTQGVEIEENPYFAISHCKPKPFNYNGSNVGLLNDTKLFIAKYGEHYGVYSKLDTEAFEMEDKKAFN
Ga0223825_126816775	F013263	AGAAG	MKADNLKELRELRNQEKAIKARIDEISDEATDEAVTILAAKGQEKGEFEVEGVGKFQLQRTESFDFADYRRYPQEQAVKWRENAKEKVKEQNLVKARTAVMNGYIKTFVELYPDKEPDEIKLTVKVIE