Scaffold Ga0223825_10677383

Overview

Basic Information

• Taxon OID: 3300021255
• Scaffold ID: Ga0223825_10677383
• Source Dataset Name: Sheep rumen microbial communities from New Zealand - Tag 1494 SPADES assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 76435
• Total Scaffold Genes: 80
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (22.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Mammals → Digestive System → Foregut → Rumen → Cattle And Sheep Rumen → Cattle And Sheep Rumen Microbial Communities From New Zealand, For Comparative Studies

Source Dataset Sampling Location

• Location Name: New Zealand
• Coordinates
  • Lat. (^o): -42.26
  • Long. (^o): 171.6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F057815	Metagenome / Metatranscriptome	135	Y
F082004	Metagenome / Metatranscriptome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0223825_1067738315	F057815	N/A	MDKVIFKDSDILEAMTAHLDYDSVVYGANGHYGVGAYHDITKVSSVFGDKDYNSQSNLDAASGSTAADVFVTNDGKMGEWFQKAEWLREF
Ga0223825_1067738345	F082004	N/A	MILHLHLNEDHLKLIKFIKIIDEDDEFLKIDKVGMLTIQSHVLDDVAMILGMKDKAIKGTSEDADGGAYPDDVEKYLLDTYNYVRDNLYYIETLLHQFATDGIKVGHYKCNDASLFWEKVDDEV