Scaffold Ga0223825_10164426

Overview

Basic Information

• Taxon OID: 3300021255
• Scaffold ID: Ga0223825_10164426
• Source Dataset Name: Sheep rumen microbial communities from New Zealand - Tag 1494 SPADES assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 104698
• Total Scaffold Genes: 189
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 36 (19.05%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Mammals → Digestive System → Foregut → Rumen → Cattle And Sheep Rumen → Cattle And Sheep Rumen Microbial Communities From New Zealand, For Comparative Studies

Source Dataset Sampling Location

• Location Name: New Zealand
• Coordinates
  • Lat. (^o): -42.26
  • Long. (^o): 171.6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027710	Metagenome / Metatranscriptome	193	Y
F066344	Metagenome / Metatranscriptome	126	Y
F072887	Metagenome / Metatranscriptome	121	Y
F082004	Metagenome / Metatranscriptome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0223825_10164426135	F072887	N/A	MEKCMRCEHDLILEGNFMLSEINGEDLSEEDDAMVTYAHCPYCGARYELTDTPESEKRNYPYWCKDL
Ga0223825_10164426169	F082004	N/A	MIIHLNLTEDHLKLVRFLNIEDKDDDVLTINKKVMLTMQTHILDDVAMILGLRDKAIKNTEEDADGAAYPDDVEQYMLDTYNYVSENLYLIETLLHQKVFEGIKPGHYKAKDNEMVWEFC
Ga0223825_1016442675	F066344	N/A	MGKFLQMMSQNDSKALVARASQINTQAKIAQEEIIHKLKIEKTNVEMQIQGLTDFAPDTTDSLRPGVKGWNPTKWAADLQDAKTRLYELNVELKIAQATFDEFFDDDEETADAD
Ga0223825_1016442688	F027710	N/A	MHQLMEKNKLYVLIDKTLKPVYGCVQGGHAVAQWMLEHKNTHLWDNEYLIYLRADIIKWRRKLDLLGVDYSEFREPDLDDRITAIAVHGHEELFKNLDIVTED