Scaffold Ga0223824_10000659

Overview

Basic Information

• Taxon OID: 3300021254
• Scaffold ID: Ga0223824_10000659
• Source Dataset Name: Sheep rumen microbial communities from New Zealand - Tag 1494 SPADES assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 43245
• Total Scaffold Genes: 56
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (37.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Mammals → Digestive System → Foregut → Rumen → Cattle And Sheep Rumen → Cattle And Sheep Rumen Microbial Communities From New Zealand, For Comparative Studies

Source Dataset Sampling Location

• Location Name: New Zealand
• Coordinates
  • Lat. (^o): -42.26
  • Long. (^o): 171.6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F051210	Metagenome / Metatranscriptome	144	Y
F071326	Metagenome / Metatranscriptome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0223824_100006592	F071326	AGG	LYTIKHMSESMTSKSQDKAQKLYQIGLKAIKVQLALNGTKFIVLRPKDNSKWKNVFGGSYSSDSTLENDYDQFETTLIINMNEMRDVWNRNRDSIEATTNDGSLEVGDELQYTRGGRTYRFKISLKQGYSELSNSLYSYTLMSIIETLDM
Ga0223824_1000065921	F051210	N/A	MNYTQLMSDPNMMIALKNSSVSAEDAAIRGREYAKMFSRNEELLSGFGLNSANLLQKTFSGYAETPLLSTQYFNASVASYVSSFAGYMSIERDFDQPNGLFYWFDVLGVTDLRPVIPNLGADQYQDVQTMGHFELPVTIANATTAYAPLIGRKLIPGTVRVKIVDGANKYELIDNGQGNFMAVAGVIKSGTVNYLNGKVEFELATAIDADPANSITIVGKEDVTGTPSCTNGASNAHANDKRFIAKMQQIGLNTVPDMLVAEYNIAALGALKKATGSDMATFLFTKLRELYTKTINYKLVTMLEEGYTGTTMSDLDLSNGPSGLADKFYDYRSRVDLFDSYLINVESALATKAVKGVNTTAYVAGNQACNQFQKGGIIGKWEKNDKMTYINDLLGWYNGIPVLRSTDIQEANGEGTFYAIHKTHDGQMAPLARGIYMPLTDTPTIGNYNNPTQMASGIYYQEGVRYMAPELVQKVTFKVG