Scaffold Ga0206682_10058001

Overview

Basic Information

• Taxon OID: 3300021185
• Scaffold ID: Ga0206682_10058001
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 40m 12015
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2073
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.6907
  • Long. (^o): -122.3448
  • Depth (m): 40

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012624	Metagenome	279	N
F015934	Metagenome / Metatranscriptome	251	N
F017226	Metagenome / Metatranscriptome	242	Y
F030875	Metagenome / Metatranscriptome	184	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0206682_100580011	F017226	AGG	MQKAHLHLIKWAVSRGYSVAVYGEGEFDGIHHTYKEIKDNVEACDMGEMILLTPSVKQAGKWKKLASFAYMFEYEQAPDETVYDYAVNDISEAWSAEYNATA
Ga0206682_100580015	F030875	GAGG	MKNTKALKIKVITTRPAPKRITQPASSWRDIMGGMKRGHWFEVECETRDDVYNRIGAAANSYCKGRYTFYKAAKNKYIFEIIKG
Ga0206682_100580016	F012624	AGG	MLNNYKGNSAYLKALKLARIEQYIADGVVWLSLSLGVVAMFTFLNWAIIARYGA
Ga0206682_100580017	F015934	GGAG	MRQTKELIFSGEHPRLITGASYSIYAVSLITNISNATLYRRLKGRDEITDWDITPAHERNPERYGKRARERSQFNKLESEADRLSSAWLRVALC