Scaffold Ga0206682_10028464

Overview

Basic Information

• Taxon OID: 3300021185
• Scaffold ID: Ga0206682_10028464
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 40m 12015
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3369
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (91.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.6907
  • Long. (^o): -122.3448
  • Depth (m): 40

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005796	Metagenome / Metatranscriptome	390	Y
F025150	Metagenome / Metatranscriptome	203	Y
F084734	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0206682_1002846410	F025150	GGAG	MIKVQTEGRDISKYSSFIDECIMSLFPEDATYDIYFEVKKFVDKDGSHAGFCMGDDIESVISLATHWVYEDGEEVAYEPHELAANIAHELVHAKQFHRGQINMVDNVWKHNNVNIDCDTIDYEDLPWEVEAYAYEVVLTDLLWENV
Ga0206682_100284646	F005796	GGAG	MLELAVFMFCVIGCGMTSYNLGKQEGIETTIEHLVDHGMLELDEE
Ga0206682_100284647	F084734	GGA	MKKYKRKPWTDEERKTLAAHYFYQDIEAMMYMLPDRTEQSIRNQVAYLRKRGYRFKK