Scaffold Ga0206682_10027549

Overview

Basic Information

• Taxon OID: 3300021185
• Scaffold ID: Ga0206682_10027549
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 40m 12015
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3442
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.6907
  • Long. (^o): -122.3448
  • Depth (m): 40

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009558	Metagenome	316	Y
F020795	Metagenome / Metatranscriptome	222	Y
F023718	Metagenome / Metatranscriptome	209	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0206682_100275493	F009558	N/A	MYRKSWEARHYWVNEFGIIEHDIFAHIPPQHYVVKWKEGFERKEKHFDNKKKAQAFFRTVRKTATDFIRIVKWH
Ga0206682_100275497	F020795	GGA	MRTATLEKLNEGELIFGSPTAGKWFVREYEDDVEMSGSFFDTEERAKAHIETLNEK
Ga0206682_100275498	F023718	AGGA	MKEKIDLSLNRSLEELIASYWEAEGEALESNEFSALENYLQGMDAL