Scaffold Ga0206682_10014535

Overview

Basic Information

• Taxon OID: 3300021185
• Scaffold ID: Ga0206682_10014535
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 40m 12015
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5317
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (31.25%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.6907
  • Long. (^o): -122.3448
  • Depth (m): 40

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005010	Metagenome	415	Y
F008384	Metagenome	334	Y
F016811	Metagenome / Metatranscriptome	244	Y
F063073	Metagenome	130	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0206682_1001453513	F008384	AGTAG	MPRYDKSLIEREAIISVQQGSLTNELGIFILQRCKEIAASAFVTDGNNELKQALIDAAVMRTCEKFLHYYTEGKSAANLVISIIYSTMTNKIVSLNHSDVYGQNIKGYLTYIEDGESVTKLMRYIKDDYLSEKL
Ga0206682_100145354	F005010	N/A	MIRKRKHIREIQKYLEMLMIDQVNITLHASRFGWSEDIQNQLTNSALLIRKYQRRLRLIK
Ga0206682_100145356	F016811	N/A	MEQEQQPQEGQMIYDVGVRLAWKKKRGNGHTNMYQGTKDRPFQFVTRAKSLDHINRNPEMIAKMMSFVGATGKSVYDFHIIEEFYRKEISNSFSHKEEDYSKEFGE
Ga0206682_100145358	F063073	N/A	MNLTAEEKSSMPIHSLILDRRKAFAELIRAFLRFNVPSAKKVEVMPNGSLSINDTIFKVDISDYTGIEVGFGYIFLNPSSGRLVIEKDNVKKIYKLEVDLLDG