Scaffold Ga0206682_10013977

Overview

Basic Information

• Taxon OID: 3300021185
• Scaffold ID: Ga0206682_10013977
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 40m 12015
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5449
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (9.09%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.6907
  • Long. (^o): -122.3448
  • Depth (m): 40

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001740	Metagenome / Metatranscriptome	643	Y
F004520	Metagenome / Metatranscriptome	434	Y
F004850	Metagenome / Metatranscriptome	421	Y
F023317	Metagenome / Metatranscriptome	210	Y
F034346	Metagenome / Metatranscriptome	175	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0206682_1001397710	F034346	N/A	MIKAIKIIAIKAVEEKMLKIYATIMTTIFLAIWIPTMAIVLKDIFMQVILPIFK
Ga0206682_1001397711	F004520	N/A	MKLTNEEKDEITWRVVDSLYEKLANELEYELQEHENFPETNDAYMNLFNEMTIKIVKYMRSELFSPGTSEDLELYKR
Ga0206682_100139775	F001740	N/A	MYNPNNPSNWSWSKAFDEMNKTVNQAELTQQSINHVLNYPGEANGVFMTLSKSQQDDVYEILDQIL
Ga0206682_100139776	F023317	N/A	MNNLNTTIDKVAMSEFDMHYYQLGDNEKKWCHDEMINNKKWLAPFWKQEGYQSETDKLCEELGILNYKNNN
Ga0206682_100139777	F004850	N/A	MIDNYEFEIYYGDIEEPLYLTNDKNYICDDMRDFMEELGIIMEEVIYKVEAI