NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206682_10009775

Scaffold Ga0206682_10009775


Overview

Basic Information
Taxon OID3300021185 Open in IMG/M
Scaffold IDGa0206682_10009775 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 40m 12015
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6898
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (32.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → Filimonas → unclassified Filimonas → Filimonas sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.6907Long. (o)-122.3448Alt. (m)Depth (m)40
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016882Metagenome / Metatranscriptome244Y
F023454Metagenome / Metatranscriptome210Y
F057678Metagenome / Metatranscriptome136N
F061281Metagenome / Metatranscriptome132N
F083272Metagenome / Metatranscriptome113N

Sequences

Protein IDFamilyRBSSequence
Ga0206682_1000977511F023454N/AMNARDIDILVDQGFWIQVSPLANAGSGWICGVYKRGKKTGNWITEASKQFDHPYDCYNWAYEFINELKIVG
Ga0206682_100097752F083272AGGMKKSHIQKIIREEFVNILREQTLVTEAFQDPIARMLAKDRSLGNSWFNFFNAMSNSFDIAWDKVPKGAFQKVPPGSPLAKKGLAIYYIKGDVENPFAGTDRYGYSRDAKISGPAVLAATINNKITYSGRGEDARVGGKSRRTDPIGRNVRGTMQVNKLKQIADVVYVFDLESYRGGTTALKSARAQLKLGKDKFTDHKAWKKANLSRYEDILRSRIGSRDQIDRMVADIVKIANQAVTDAVSGALKQDQYGDIMTTVSGQEVMLKDVTSSMSNALETYRRYIDAENQEDAAAKQGSGYSGKYYGEKKKEYALEIKRYLTGFKTGKIKRY
Ga0206682_1000977522F016882GAGMAYYVSRVKIATDTPKGVKWLTESYLINAVSVGHAEQLVHEDFKDSGTEFEVKSVSASKICKVIGTTKKL
Ga0206682_1000977523F057678N/AMIEYEINDKIVFRYNNVNEIGVITNVRRHKKTVIGYDIRSEKGSGYVLVQVESNLTTRQRNKRTEYPLIDSKLTAAWIGSDSETNLFAKENVGHTRANFPKGYPLYFDGEDGGGMHQFEKHNDLIFPTQGPRSF
Ga0206682_1000977524F061281N/AMNKFKKRVLKQFPNACVESAANGLRIVNNDQVLAEEFYMPDTHCEDTAWEYASMACKLTQNFNRAHPLRMDLSDVENKLARINRRKRNGRRVK
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