Scaffold Ga0206682_10008862

Overview

Basic Information

• Taxon OID: 3300021185
• Scaffold ID: Ga0206682_10008862
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 40m 12015
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7328
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (30.77%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.6907
  • Long. (^o): -122.3448
  • Depth (m): 40

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005934	Metagenome / Metatranscriptome	386	Y
F037985	Metagenome	167	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0206682_1000886211	F037985	AGAAG	MKKITTASKSQLRLRAIGCAYTLLYILGWPLLYGILPSYSSYYVFGGIYFTLATSLMAWSLWMHRDIKWSIPAYALVGVALFDCVDYWMLHNIVAIIFFLSSTYLMKSDKRFDWIGDISVTWYILLVMPGGVFWFEVIQAVLISWFHWSYVRRLWKVRTERE
Ga0206682_100088622	F005934	N/A	MIDKKYYIDKGFELYAVMTASDKYTQGIDILYPSTPIKSDNQPAVYILTDKSGKLLKIGETQNLTSRFYKAYRCISNTTNNRIRKFIKEQEDIWVYVLPLPIVTEKILGYKCGTSYVKGLEYHLLKEYKDQYEKVPPLNSILS