Scaffold Ga0206682_10003092

Overview

Basic Information

• Taxon OID: 3300021185
• Scaffold ID: Ga0206682_10003092
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 40m 12015
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14529
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (55.17%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.6907
  • Long. (^o): -122.3448
  • Depth (m): 40

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016207	Metagenome	249	Y
F043079	Metagenome	157	N
F083239	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0206682_1000309210	F083239	GGA	MTENYLDLTIDEVYDVITSVNVWPQSFDMSKKIAFMNHMITYFEKKEEYEKCAKLQRLIHVMEDS
Ga0206682_1000309228	F016207	N/A	MRYYILYPGNTENDTINAINQLGDDNGFGVFWANRGLNVLMNAVDQQHSITEELVIKCERGKSYSIEEFLDKIKSLKVRIQD
Ga0206682_100030929	F043079	AGAAG	MKNVLNYNGSSMSWKIVSKITDTYDFQDGSQNSYIVYVQDSAGINIAAKEAYGIADRTKVTKELINEYQEYGIVKIEHQDH