NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206682_10001477

Scaffold Ga0206682_10001477


Overview

Basic Information
Taxon OID3300021185 Open in IMG/M
Scaffold IDGa0206682_10001477 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 40m 12015
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)23093
Total Scaffold Genes37 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (13.51%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.6907Long. (o)-122.3448Alt. (m)Depth (m)40
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002033Metagenome / Metatranscriptome601Y
F029449Metagenome / Metatranscriptome188N
F051960Metagenome / Metatranscriptome143N
F095562Metagenome / Metatranscriptome105N

Sequences

Protein IDFamilyRBSSequence
Ga0206682_1000147734F051960N/AMSKETETKVVDMTTEKAPKTVEQLKTRESELDQINENLIKEMQEREYPVDFKTKKVFDKLLKFLEKDAPWGHTTATGLIMLYHNLREAKELVKDKEFDGIVAVRSTSVTILWQMVTKMTGSGFYEAKSFVELMANVGESLSEAVQNVQKDNQSLRDNHSELAKVQQELSDLETQTSVEGPINK
Ga0206682_100014775F095562N/AMEQTDDPNILRKQVDKIDKELDQLEKVKEEIQNECKHKGETFVQFDKSNSMKKYCSECKRELGYPTKAEQEIFLGNKTKYGNS
Ga0206682_100014778F002033N/AMSKFNKFFADHGIKIVLALMLLTYFKSCSIDSEVERIKKEQRILTTEIDTLSTQIVNEEEMIYLIKTVPAWKTLRIEEISDKERISINALEEKED
Ga0206682_100014779F029449AGAAGVAGRVPIIPGVPTPSDPQCSLTYCGRIIAQVDCIKYIMQGTTACIDIQLFGANDLPLNLDNICDIHIQLTNELECVVANFWYPDIPSGSKGFLIDVLQFTDTSGVIHNEGLIRICLSAECTKVSPGNIFAEILLTECANENTGDPTGYLPTGTAEVYGIPCLWVATILESKINKNGGSSGCGTGGLVTGSI
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