Scaffold Ga0206682

Basic Information
Taxon OID	3300021185 Open in IMG/M
Scaffold ID	Ga0206682_10001053 Open in IMG/M
Source Dataset Name	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 40m 12015
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300021185 Open in IMG/M

Scaffold ID

Ga0206682_10001053 Open in IMG/M

Source Dataset Name

Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 40m 12015

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	27665
Total Scaffold Genes	51 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	45 (88.24%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

27665

Total Scaffold Genes

51 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

45 (88.24%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	36.6907	Long. (^o)	-122.3448	Alt. (m)	Depth (m)	40
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

36.6907

Long. (^o)

-122.3448

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000256	Metagenome / Metatranscriptome	1448	Y
F005590	Metagenome / Metatranscriptome	395	N
F005843	Metagenome / Metatranscriptome	388	Y
F009460	Metagenome / Metatranscriptome	317	N
F027482	Metagenome	194	N
F039583	Metagenome	163	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0206682_1000105315	F039583	AGGAG	MTNEKQTFQNQANRMAARKKFLDALQEDQREALQKSFDAMQNCVWMLNECNDLYVSDVAKLQSAYHELQNIFFEIEPSDWQLERFAEHDVKWPPAPRGRPAKSD
Ga0206682_1000105318	F027482	AGG	MDKKDLEKWLDRMFAEGKAVAYPCGHFSGREWCRSFDEKLASCLTLAELEGFANRRRFDPSLPRWTAAERAEILKRKIKLEKGKRK
Ga0206682_1000105328	F005843	GGAGG	MTLAEPVFMAFVIFSSPDECKAFAKYYDLARIFEPQCVEMGGEADYRRPWPDVRPQPRPTQENENG
Ga0206682_1000105329	F009460	AGGAG	MAKWDLSKLENSASVGAHIDEDSSAPTQPTPQMIIMSIRRKADIMRMDAARKPERRTMKQRAEEIISLCDMLERRL
Ga0206682_1000105331	F005590	GGAGG	MTENLTPLERWKELAIIENARMKRRLIGRDVMHAYAYKPWPLEKLRKEIKRCLSRHDELSVGDLCSMIEQDAVHIDIGLKTMRERRTIVKTSFIEGQQLYRLRTQEEFAL
Ga0206682_1000105337	F000256	N/A	MADGVSGIGSAPFNVGSDIHQQTQTRERIEAHLVEQRVAKEHRANHTHLEALREQKLDLGKGYDRFGAKTNADRPQGTNINIEV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0206682_10001053

Overview

Ecosystem & Geography

Associated Families

Sequences