Scaffold Ga0206682_10001017

Overview

Basic Information

• Taxon OID: 3300021185
• Scaffold ID: Ga0206682_10001017
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 40m 12015
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28344
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (53.85%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.6907
  • Long. (^o): -122.3448
  • Depth (m): 40

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040106	Metagenome / Metatranscriptome	162	N
F042905	Metagenome / Metatranscriptome	157	N
F042906	Metagenome / Metatranscriptome	157	Y
F052547	Metagenome / Metatranscriptome	142	N
F080057	Metagenome / Metatranscriptome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0206682_1000101710	F080057	AGGA	MLNNDWKNIVDGGRGEEFTSIDNMKQYKIQVNLEILEGCSYMCPGCFVKRKGNWNPNSIATFHSLAYELKDRDDIVLDDIVIGPTDFYGAQNLEEIINNQRLADAISMMPEDNRNIQHNCSILGSLSEKDIEGKIKSIENSLLGKVVEAWDVQIALDLNRLMNDQVYLDALDERVETFKNSSLNFEISMATNIVKGVEDILFPAIEFVRDRYETVIEVLPSVVRSFNHSAKHGDKLFEWNDMLTRLAVDPYRFKNKFHFLQGDVSHKAFHYSVISIYHGDMYLSPFIYENAQIHTDDFKVDNGWLWLPDADITDYILRKKDEVVVSQIENSGNKECGSCKYLNICANRMVPMIMDTVFDGRKECILNKDVIGLYDDEVYHGNSY
Ga0206682_1000101711	F052547	N/A	MMRFIMGIVTNNKRAAQADKDFDLSFSEGHEIKVQFNCEVLSGCEFKCKGCFVNKLGSNMGSYDRLNNAIDLFNTNGYRVSTVNIGPTDLFGNNNVIELLQDETFRECLSKVSTIQFVTTLTNISSEVIDLLNSIPKIDGFMYDVNIALQPPVDWDWVEERLNLLNGFTDDLNYYMVYNMGNDDEYNSKVLEMSELVEDRFDSILTLNPSFFRAPKSKVQQHLIEKWKGYDFSDDLMPKTFIDQAQGGSLELNYTYCNERFFWTPFVYDIALIGTDEFKVKDENDIESWTEAKSFQFMEQLTYSAETNNCGSCPNMMTCIDKGVLSYMKHHSLLSCVFPGVVTTNKS
Ga0206682_100010175	F040106	N/A	MHTIATQVAIVVATVRGEEDKMSMQKSYCKQMRYSGPESLSPDSASKFDVLIQMEVLAGCDHGCLGCFVDKNIDPDMNQQIIDRAKELTDGVARTGLNLREFVIGPTDFFSATNTESVLNNSIVQDIMREHTGARIAAPAKFDIATMERVKEIYAILDDEDKFRRDMIIEFIMPIGKVDQMLNDEDYFNNVMEKVQFFKDSTPKQMDWSWTLQASNVVGKKIDKETYNKIIQKSVNEYETIVEMNPAFSRARSQLVQRRNLFGWNDFLGKVIDKDNAQETVMSMANLYCNSINFIGLTIVPGENGPTTHLNVMLHEQAFFLNNKNLDVTGLTFEEILDRKNELVTKGINRSSKVSDCNGCQFAVACASRLIFEAQETLNVDGCVLNKDVLAEYNPYDWTWNDDAMEKLGVTS
Ga0206682_100010178	F042905	N/A	MIVHLNGTYAGYYSYDEDKSPINTDFLRTEINLDILHGCSQMCPGCFIPRKNLTKADNLETLYNLLIEGAYHPDEITVGPTDIFDAENFREIMTHPYMKKLYGISAIGFTSTLLQSYQEIRYKLDMIWGLYKDIHRIPDIDFKIVLDIDKYLDGELDDWYKKLEMFKLGSVQFRVNYHKDVFKRIGYNELCQRVFDDFNAPVVITPSFLTDRNVRGKVSQHLENFKRDMLEQKIDDKWLNLYTFFDAKFNGYGCQNYSFYNNKLYLNPFLYDVIIQRTPQFETTMDANTLYDNIEYAQQVDDCNGCEYMMSCAERNIHLYMESRGLDSCVALKEYMYASD
Ga0206682_100010179	F042906	AGGAG	MPLIKNNLYYEMTTETQTKPVSAVKIQLDVLDGCHHKCPGCFVHRRGNSSDPHQLEEAKQFIKTITDQGILVDEMLIGPTDFLASENFYEVMPHLLDVINENSPILAFVSTLIDGDIKKFCQFITDNINLDTEIEIGIATNPHKFFNEDYIQHVSEILDYIDKNLQHEVTYTFVVNIKDYGLDYEELHDQAVKRFDTILDFIPSVSRSHKANIILKTLDEFNEYFSTWHRESKLNNIMVDHSHAGMNYTVLNYKRGEWYLSPFMYENMAIYHDMFKVDNFNSVNGMVEQQIESAKGTECEDCPLFFSCYNRKIIMLRDYLGVDRCIAPKENMLNNIHNYNAPAQTMYQWDGYSVENDKQGYRKKFLVTTDDDPELERIKDISYVK