Scaffold Ga0206682_10000882

Overview

Basic Information

• Taxon OID: 3300021185
• Scaffold ID: Ga0206682_10000882
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 40m 12015
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 31037
• Total Scaffold Genes: 49
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 38 (77.55%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.6907
  • Long. (^o): -122.3448
  • Depth (m): 40

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027807	Metagenome / Metatranscriptome	193	Y
F034404	Metagenome	175	N
F040054	Metagenome	162	N
F048234	Metagenome	148	N
F066271	Metagenome / Metatranscriptome	127	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0206682_1000088210	F040054	N/A	MTMIKLPILSMPLPDGGSVVCRVEAIMGATSNMRNEDLTDVYVDVMCPEGITIDVDIDSFTQNWLAALITPMSEMREDHEMH
Ga0206682_1000088219	F027807	GAGG	MSIKFVEPKPIKAELIQELDGLVGQLHNLSIRKPMPFHVQEAAMEARMSDYLELSEQDFICGWTDCEEGIEHREGKSEAYNAGYADCYQYENRGGR
Ga0206682_1000088220	F048234	GGAGG	MQIAIQISKQVDDWDKFVDELEAIEVTARAEDYDAEAKVVTILVDQKSIDDHYHPVGGRYPIEFEGRKEFVEEIGICVHSCKWQDHNIINAEEVCAKLEGLDYVN
Ga0206682_100008824	F034404	GGGGG	MLQTVTIDWHPVEQGSMPRNEGSYLVAFDDGAVETYPMSDQDIKRGEVRDGQTHGLLWAAGIPSPIDDGED
Ga0206682_100008828	F066271	AGGAGG	MCVQSQRQFFAERHHIVVTDKTAELLARLGRDKGIGEEEYLKRLSRHPNEDHFIAEIARHYG