Scaffold Ga0206682_10000824

Overview

Basic Information

• Taxon OID: 3300021185
• Scaffold ID: Ga0206682_10000824
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 40m 12015
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 32458
• Total Scaffold Genes: 50
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 48 (96.00%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 9 (100.00%)
• Associated Families: 9

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.6907
  • Long. (^o): -122.3448
  • Depth (m): 40

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002322	Metagenome / Metatranscriptome	571	Y
F002542	Metagenome / Metatranscriptome	550	Y
F010313	Metagenome / Metatranscriptome	305	Y
F018181	Metagenome / Metatranscriptome	236	N
F021087	Metagenome	220	N
F022159	Metagenome / Metatranscriptome	215	N
F037238	Metagenome / Metatranscriptome	168	N
F065670	Metagenome / Metatranscriptome	127	N
F075856	Metagenome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0206682_1000082413	F021087	AGG	MRMFNMTLEQHLEEMGIRPKSIIRELEELLDPRLEYLAKGYFNDPRNGNGEVPF
Ga0206682_1000082415	F022159	GGAG	MTLDTRMVSMVLAENANEFITVKFLTKDDEERTYNGRLNVKKYLVGGERGRKAADVLKKHNLIPMFVGKDGEKPKYKSFSLDRVLALKAGGRHIFGMGNEIA
Ga0206682_1000082424	F010313	GGA	MTNEQTIIKSLDDSAMARVYHRKRKAVNKAATITERLAFVLAKLTGILYFGFLCFCLGYFSTLYFDGLLFEIPGLVSYWVDFGGKQ
Ga0206682_1000082426	F075856	GGGGG	MRRLEIEYRTLVFRKDSDKWHCFHAYPCQYACLDHAAELTIDKPHLDFIPVMWRFDANTYSCLTGDDPD
Ga0206682_1000082427	F002322	GGAG	MIAALPYSKLVEKHILECIQGGIGIRQMIASMQHLQDAPKSLSTMYKIYGSFIEMERAKINGAVGKRVIDQALDGDFKSQELFLRSKGGWSPTQTNIEVEQETDPELDESATATLMSLLGYNTDAPEEETTCTCEKDNCRCS
Ga0206682_1000082436	F002542	GGAG	MHPTYLGWQVDWPVFIKMPLLADNTNWKRGDHFNWAERGIDQDKVATLYAAGYVHHNKELEVQNKVGDRLSELAGKELETLVNLLNVEVNKRTSSKAEFESKKCKKSKIDDKQRGLIRRFLNVNRWITEDFYEIRDKVLAD
Ga0206682_1000082438	F037238	AGGAG	MSFRSFDLLNLVRDFGETLTLRKVTTAGTYNPATGAVDSSATTDYSVQGYLYNYNVGVIGGNDEVVRGSRKCIISALDLAAIPDFDDLIIGSGDAVKVISIVSLFSAGTAIGYICDVEE
Ga0206682_1000082439	F018181	AGGAG	MKAQNQFVKVNASFYKKMEQLEDIVEDAVKEELISIAQSAVSFSPVDTGAYVTSFSFTTGAGRPRGKSSDNKPKKQNPQQKMQEGFQNLLTDINKIDLKNTASVQLRNGSPHAYDVENKGPTWRRSGYKVFAKIRNIYG
Ga0206682_100008247	F065670	GGAGG	MTKEEMRKLIRALEKSEDVTVEEAVYLIRKRQRELENLEVEYELNWA