Scaffold Ga0206682_10000543

Overview

Basic Information

• Taxon OID: 3300021185
• Scaffold ID: Ga0206682_10000543
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 40m 12015
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 41080
• Total Scaffold Genes: 67
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 51 (76.12%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.6907
  • Long. (^o): -122.3448
  • Depth (m): 40

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001153	Metagenome / Metatranscriptome	764	Y
F006939	Metagenome / Metatranscriptome	361	N
F030435	Metagenome / Metatranscriptome	185	Y
F033796	Metagenome / Metatranscriptome	176	N
F036783	Metagenome / Metatranscriptome	169	N
F053299	Metagenome / Metatranscriptome	141	N
F059965	Metagenome / Metatranscriptome	133	N
F065669	Metagenome / Metatranscriptome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0206682_1000054315	F001153	GAG	MAIPAKKYSEVIAKKVVAGVKNGVAVRDILGSVQKYQDAPASTATFYKLYGNLIAETKADIVGEIGSVVVEAAKGGDFKAAEFFLRSKGGWSPNSTVNEVEQDVDPDLDESAIDSLMSLLGKSDPDEETDNG
Ga0206682_1000054317	F065669	AGGAG	MPKVVSPKVFIDTLESFFDEHGGHQRIIASAFAQYIHTNWDEYTGSYSDACGVRDILNACYDLSIPEINVGQWSLYVHYNSNACYASKLVDMESKNGS
Ga0206682_1000054323	F036783	AGGAG	MLEIVRQKYGRHVDTRVYIDLGYGEMEIDVEDIEMVDGELSAMAYCPQREIELYADHKDCERALAKFEKENSNE
Ga0206682_1000054326	F033796	AGGA	MSSKQDENKTYKVAGVHSGKKGVTVLDGNKRVLEEAEQSAKLLTGKYALENSLGITNFVAFNTHALTMLPPYSIDMEAEWNYVVEQEGDDTPSVEINRQIEGSI
Ga0206682_1000054327	F006939	AGAAGG	MTLPLNMVTNVLSENQNKFITVKFLTKDNEERTYTGRMNVIKGLKGNEKGRIASEALRKAGYITLKTKQGYKCFNVDRVLGFVAGGRRIFGLGNEL
Ga0206682_1000054328	F059965	GAG	MPLPPSMEMELIELGILKSDTEELESIAEQTGFYALRAETIAWHNKLIIDGEVMF
Ga0206682_1000054330	F053299	AGGAG	MKDYKPYYRTDKMKQEELRTAKYVSILFFTMIGFSFIGFSFVLVKAMLYMTGLFL
Ga0206682_1000054331	F030435	N/A	MNNKDILDMCRRLASKYYNHQDYDDIVSEGVVLCLKMRAEGIKEPSKLYYSARTAMFQYVNVSMSNFSYPKGMAGREAVLEDTIEYVVSDDVDIPSEDLYGSYELKNSIENLKKFLTDREWKVFMILYNNNNNLTDTAEVLKLSKQRVEQIRNKIRDKLVTICELDI