Scaffold Ga0206682_10000442

Overview

Basic Information

• Taxon OID: 3300021185
• Scaffold ID: Ga0206682_10000442
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 40m 12015
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 45187
• Total Scaffold Genes: 37
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (13.51%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.6907
  • Long. (^o): -122.3448
  • Depth (m): 40

Associated Families

Family	Category	Number of Sequences	3D Structure?
F052885	Metagenome / Metatranscriptome	142	N
F056904	Metagenome / Metatranscriptome	137	N
F057512	Metagenome / Metatranscriptome	136	N
F061979	Metagenome / Metatranscriptome	131	N
F098059	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0206682_1000044211	F061979	AGGA	MILNPFELSDTELDIQVRSGVLLEALGPEIWVYPNKYRPYLVRYILYLYDKGSELRRYFPDIAERKKVCAELAGFDLTNKVHQDKAEEFYVLAHKSSRLSMITFVKYQNNVIYGLYWSNIEHLWKLISDVSKQFKEFSNDKAYLEGQKIKSQMLELAEETLGRIKKHELELFQGDDLAKELTAKTRQGSFPEDVAKLGDVY
Ga0206682_1000044221	F052885	N/A	MRNSDYNNYPEWMKKPFTEKVIYTYADIKKDPDNPGRYIIPASYQFKLRDQIVVTDEDGTNPRPIHIAYTKGTNADGSLMIGYDLFFSEDNFGRIVLDPKRASDHSKFMFMEYSNMNGSNPNRDESVKIIWTKQDLEVKAKASRVDRKARKEAMLEAAQLSPYMVEVLIDVLGSTSDKEKSEEEKRDYIEDIAETDPKIFLAAVKSTLSEIISTTKKAKDLGIIKNDFKKQAFISQPDEEVIFSTKGLDKKKTYELFAKFLQENPKVLKTIESKVLMEQELV
Ga0206682_1000044229	F057512	N/A	MITIAKLSEQISRIYARYIDKENPNTIVDKREIKLLVVDAIHTILGSKLAAQSAKGFVDIPEALIATYENISVDNASSVYTCTLPAQPIAAAGDMGIYEVFSDELNPFIPIPKQIMKVMQGTDLAVLESKVGYFRSANNKIRFTTDPTVSTITMRLIINDISKYSDTDILPLPADYNLGVIELVLKTLGLGVGAIQEFNVEQAQENAD
Ga0206682_1000044230	F098059	N/A	MQTKTLNQIVRNEIVNSQLTLHNYVPFLFYAIQEVKKLSDVFDFNKAESELTITGRTAPLPANYRRVVAVSKIEGERLLPLPYDHQMNTDGVEYVTPDTNGYFGPSIVSDDNLYYTINETTNKIILSTEAGSNKHRLMLTYEPPLFSTSGNTLIPIIFERVIQMSIRLQRAKNSRAERGDVNRVNEILVVEKEYNNAKRILKTHLNPFTWEDIMMVTRKSIHRSIKN
Ga0206682_100004427	F056904	N/A	MKQPSSPYNYLAVKVDSFFNDEIKSQTLDLKIRTDLRPTHHTRIYGKVVALPRKYKDDVLPDGEVLWSSEGIESFYSLGDKVYFHYNCVLDKGKQISDDTFLIPARRIFLRVECDNIIMSPGFSLGHKKYNDNVEEIELDGKKTMAEISEETGIVIDIFPKPMPNILVIDHSSKNERLGVMCHMLDDSNMEIEIEDNNYYLLEDRDIIGMYK