Scaffold Ga0206682

Basic Information
Taxon OID	3300021185 Open in IMG/M
Scaffold ID	Ga0206682_10000024 Open in IMG/M
Source Dataset Name	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 40m 12015
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300021185 Open in IMG/M

Scaffold ID

Ga0206682_10000024 Open in IMG/M

Source Dataset Name

Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 40m 12015

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	125233
Total Scaffold Genes	132 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	84 (63.64%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

125233

Total Scaffold Genes

132 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

84 (63.64%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	36.6907	Long. (^o)	-122.3448	Alt. (m)	Depth (m)	40
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

36.6907

Long. (^o)

-122.3448

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017578	Metagenome / Metatranscriptome	240	Y
F050003	Metagenome / Metatranscriptome	146	Y
F054027	Metagenome	140	Y
F077923	Metagenome / Metatranscriptome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0206682_10000024107	F050003	AGGAG	MGRPLKIAKSLTKDIAYNNPGDDVANRTPSGELYYGVVGGDVSLSSITNPITSTRVRPTGGSITAEGEGFIIKQKGASKFLVSRLDASAIDPANAVVGSTVRVVAVGDTDWASMGAGKGTIAVGMIFTVEAASAAGSSGTVAECGICTLANEADSGLSTGSMTVTYTDVGSSLVRLKRFSNRHGISFADAPVLLNFFNILDDTVKIGGSGSSASPATRDLVQVENPDLG
Ga0206682_1000002427	F054027	AGGA	MARISNTKGIKATGGSQFELIMAASGRARSYSADNQPLTPHFNKRGMTALREIEQGLVAYDDIKEMMINKNQTVRPKEETEADSILDI
Ga0206682_1000002440	F017578	AGG	MQALNQITGAMDDIDTILQKHLRNYTQVFRRYTPYDPREWTELLKRVHRDFGRPSERWAWMIDHEWQKQMMEDPEWRGVAVNEWHVIFYFKEESDAVMFGLKY
Ga0206682_1000002494	F077923	N/A	MGLIKFKHNNRTIAIVRNHKCSTTTMLSYVAQALWNADPKEEQFYQNFQNEAPGVYNKARSFEQFESELLAADIRIALWRDPVDKFVSGFYHTMTNPANKNLWIKSPSLTNFLKDIEVYRQNPNVADHCETNTARLGPDRSIYTHIYNYKHVHKIAGILGVPSLDTHHRRDSTMRAGPTELQRLRIRQVMLEDYANGWCESG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0206682_10000024

Overview

Ecosystem & Geography

Associated Families

Sequences