NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0196959_10000626

Scaffold Ga0196959_10000626


Overview

Basic Information
Taxon OID3300021184 Open in IMG/M
Scaffold IDGa0196959_10000626 Open in IMG/M
Source Dataset NameSoil microbial communities from Anza Borrego desert, Southern California, United States - S1+v_20
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3959
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Sand → Desert → Soil → Systems Level Insights Into Methane Cycling In Arid And Semi-Arid Ecosystems

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.3049Long. (o)-116.2547Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006339Metagenome375Y
F020164Metagenome225Y
F020315Metagenome / Metatranscriptome224Y
F021723Metagenome / Metatranscriptome217Y
F022153Metagenome215Y
F057109Metagenome / Metatranscriptome136Y

Sequences

Protein IDFamilyRBSSequence
Ga0196959_100006261F057109AGGAGGVRENPDSEREEVPGRPAVSPQNTREQAKEGKEQRAEEGRGDPATRLRLFVRRFFGR
Ga0196959_100006262F020315GAGGVDERSLQLLKVMREQVGESTGRTVDAGEAAKRLGMYPETLDRSLLYLVRAGYIEEYADRAMSSRNGMFLITLQGIAAIDNA
Ga0196959_100006263F006339AGGAGGMQNDQTAQDAKRLLVAMSSNHPEARRASPYGLDRPFSPSWADAEQAGLDRVRRDAAISWLIENNMLKREEKPENLRDEGKEVPDYDYVYGSVFRITDDGRKLLEEIWEEQRQ
Ga0196959_100006266F020164GGAGGLAGYLPKEWNGKRVAVRFTSGRGFDARLVSDNAGGITVEPVKEEDAEDEEGGARSAFVPWAAVRYIQLLEEPSERQKARPKRTAAKKPEEPAP
Ga0196959_100006267F021723GGAVPDANELKLLASRQEQAFHEKFGYPAREVPDLWVGKLVALNMLGGRGAVSGMLEAIRDDGFVISVEDRVVFIPRSAVLQMELYEASERG
Ga0196959_100006268F022153AGGAVADPVGFTNAFGKLEQAIRELVGAGDIKERLKVATMALLLIFPDDFPAGHLRDEYADIRQALAWPPPEEGSEQGLLESTLEAMTEEEAGELAKSIFSLYTSAAEAVYGGLRGR
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