NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210388_10114640

Scaffold Ga0210388_10114640


Overview

Basic Information
Taxon OID3300021181 Open in IMG/M
Scaffold IDGa0210388_10114640 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2318
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001528Metagenome / Metatranscriptome677Y
F005822Metagenome / Metatranscriptome389Y
F064903Metagenome / Metatranscriptome128N
F090320Metagenome / Metatranscriptome108N

Sequences

Protein IDFamilyRBSSequence
Ga0210388_101146402F090320AGGAGMIDLKSTQHRENAGSWTPSEFGGLDQLDWLMILVSVLIGTLAKQHQFLQLPAGFLEWVFPFLLMMAGYKARGKITEIIKVRRAKTRKAPDE
Ga0210388_101146403F064903GAGGMRSLFPSNYDRADVLMSAGCSTFVSAALILVIPRVGVLLLEILFGLFFIGCALMARSRARRRVLGKEVPQKSSDAKAKWFDRYDVLMILAVVVVQTAAGGLLRKAGWSEGTVSILPLITFAAGILLKPRVVEFVERRRKTYPAEADCRSTAAQPENLAPTDRALGPE
Ga0210388_101146404F005822GAGMSVNGTETIAESKGPQSPPANGRATRVAADSKATPARGMTTRRRRDRQDSEKSAEERFFLATGSRNGDLPALGRECISEAEAIINAFREQVNFYRVSEFQTRADVGPSGEPILRKDGLKKNNPAS
Ga0210388_101146405F001528AGGAGMSEKNQVVVVLVVALSLGAFVDRITALKIVAGVALLWTLQNQPTVFECIRKVFSLRRGRFSVREYRGGTRTVRVS
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